Ancestral
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MEGA v.7.24.2827
MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses.
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FASTML v.2.02
FASTML is a software for computing the ancestral amino-acid sequences of a phylogenetic tree.FASTML uses flags in the command line arguments: -For help, type "fastml.exe -h" -s seq.aln = the sequence input file name. -t tree.txt = the input tree file
PAWriter II v.85
Personal Ancestry Writer II (PAWriter II) combines most of the features of the LDS Personal Ancestral File program (PAF) for the Macintosh, for which all development stopped a few years ago after release 2.
Legacy v.7.5.0.112
Legacy is a family history computer program that makes it extremely easy to store your genealogical information. Family trees containing millions of people can be recorded, displayed and reported.
GEDmark v.1. 2. 2002
This free program from Progeny Software is a final answer for many genealogists, previously scared to share their files because others might use their work without citing the source.
Malin v.1.0
Malin (Maximum Likelihood Analysis of Intron Evolution) is a utility package for the analysis of eukaryotic gene structure evolution.
Statistical Dispersal-Vicariance Analysis (S-DIVA) v.1.9.0425 Beta
Phylogenetic trees analysis made easy. Statistical Dispersal-Vicariance Analysis (S-DIVA) is a software for inferring biogeographic histories and provide high resolution pictures of phylogenetic trees.With this program,
MANTiS v.1.1
Build a relational database integrating, in a phylogenetic framework. MANTiS is an software system that: builds a relational database integrating, in a phylogenetic framework, all Ensembl genes,
Mesquite v.2.74
Analyze comparative data about organisms fast and easy. Mesquite is program for evolutionary biology, designed to help biologists analyze comparative data about organisms. Its emphasis is on phylogenetic analysis,
TreesimJ v.0.7.1
TreesimJ is a flexible, individual-based population genetic simulator. It tracks the state of a population evolving in forward time via discrete, Wright-Fisher generations.
Fastsimcoal v.1.1.1
Fast sequential Markov coalescent simulation of genomic data. fastsimcoal help you efficiently generate genetic diversity for different types of markers along large genomic regions, for both present or ancient samples.